The 2.0 version of rSNPBase

Variant report

Variant rs2619540
Chromosome Location chr6:15623824-15623825
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:15594000-15626600 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr6:15597000-15641600 Weak transcription Spleen Spleen
3 chr6:15600000-15660400 Weak transcription Hela-S3 cervix
4 chr6:15609000-15628200 Weak transcription HSMM muscle
5 chr6:15609600-15627400 Weak transcription HUVEC blood vessel
6 chr6:15610400-15626000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr6:15610600-15640200 Weak transcription Aorta Aorta
8 chr6:15611800-15641800 Weak transcription Fetal Muscle Trunk muscle
9 chr6:15614800-15641600 Weak transcription Lung lung
10 chr6:15615000-15652600 Weak transcription Colonic Mucosa Colon
11 chr6:15615200-15624000 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr6:15615200-15626000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr6:15615200-15626000 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr6:15615200-15641000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr6:15615200-15642200 Weak transcription Thymus Thymus
16 chr6:15615200-15662200 Weak transcription Gastric stomach
17 chr6:15615400-15624000 Weak transcription Brain Cingulate Gyrus brain
18 chr6:15615400-15628800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr6:15615400-15643000 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr6:15615600-15624000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr6:15615600-15626600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr6:15615600-15639000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr6:15616800-15630200 Weak transcription HepG2 liver
24 chr6:15616800-15631800 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr6:15616800-15632000 Weak transcription Esophagus oesophagus
26 chr6:15616800-15638600 Weak transcription Psoas Muscle Psoas
27 chr6:15616800-15662000 Weak transcription Placenta Placenta
28 chr6:15616800-15662200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr6:15617000-15626000 Weak transcription Duodenum Mucosa Duodenum
30 chr6:15617000-15631400 Weak transcription Fetal Intestine Large intestine
31 chr6:15618800-15626200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr6:15621000-15627800 Weak transcription Fetal Brain Female brain
33 chr6:15621400-15624400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
34 chr6:15621800-15662200 Weak transcription Pancreas Pancrea
35 chr6:15622000-15626000 Enhancers Pancreatic Islets Pancreatic Islet
36 chr6:15622000-15628800 Weak transcription Fetal Stomach stomach
37 chr6:15622200-15625200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr6:15622200-15625600 Weak transcription Primary B cells from peripheral blood blood
39 chr6:15622200-15626200 Weak transcription Fetal Thymus thymus
40 chr6:15622200-15627000 Weak transcription Ovary ovary
41 chr6:15622200-15627600 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr6:15622200-15628200 Weak transcription NHLF lung
43 chr6:15622200-15632000 Weak transcription Fetal Intestine Small intestine
44 chr6:15622200-15637800 Weak transcription Small Intestine intestine
45 chr6:15622200-15638800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr6:15622200-15641000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr6:15622200-15641600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr6:15622200-15641800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr6:15622200-15643600 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr6:15622200-15649200 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015