Variant report

Variant	rs2205852
Chromosome Location	chr6:15561257-15561258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15559880..15562215-chr6:15563099..15565943,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1018381	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1018382	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1040410	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10949305	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752196	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11752598	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753919	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755055	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11757499	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759609	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13437303	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16876671	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1997679	0.95[ASN][1000 genomes]
rs2619516	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619519	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619526	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619529	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619530	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619533	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619534	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2619535	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619540	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619541	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619544	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619546	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619548	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619552	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743548	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743549	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743550	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743551	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743853	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743854	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743858	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743859	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743860	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743861	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743864	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743865	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743866	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743867	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743869	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743870	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743871	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743872	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459408	0.95[ASN][1000 genomes]
rs6903159	0.95[ASN][1000 genomes]
rs734129	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752070	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7770921	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875463	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296976	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296977	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9296978	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296979	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296980	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9296981	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9296984	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9296985	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296987	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296988	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464793	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9464794	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464795	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9464801	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464802	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464803	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464805	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464807	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476835	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476836	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476837	0.89[EUR][1000 genomes]
rs9476838	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476839	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476840	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476841	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476842	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476844	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476849	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476854	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476858	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476859	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476860	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476863	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476865	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476866	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476867	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476868	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476869	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476883	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:15552200-15569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:15552400-15563000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:15552400-15577400	Weak transcription	Lung	lung
8	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15552600-15568800	Weak transcription	Fetal Kidney	kidney
10	chr6:15552600-15569800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:15553600-15569600	Weak transcription	Left Ventricle	heart
12	chr6:15553800-15563800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
14	chr6:15555000-15573200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:15555800-15562000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15556400-15571800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:15556600-15570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:15556800-15571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:15557200-15563600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
21	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:15557800-15561800	Weak transcription	K562	blood
23	chr6:15560800-15562000	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:15560800-15562600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:15560800-15568200	Weak transcription	Dnd41	blood
26	chr6:15560800-15569800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:15561000-15562800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:15561000-15563200	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links