Variant report

Variant	rs9296976
Chromosome Location	chr6:15525453-15525454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15513759..15516208-chr6:15524311..15526503,2	K562	blood:
2	chr6:15522144..15525319-chr6:15525407..15528669,4	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1018381	0.88[EUR][1000 genomes]
rs1018382	0.88[EUR][1000 genomes]
rs1040410	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10949305	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11752196	0.87[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs11752598	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753919	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755055	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11757499	0.86[EUR][1000 genomes]
rs11759609	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13437303	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16876554	0.82[CEU][hapmap]
rs16876555	0.82[CEU][hapmap]
rs16876671	0.86[EUR][1000 genomes]
rs2205852	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2237110	0.82[CEU][hapmap]
rs2619516	0.86[EUR][1000 genomes]
rs2619519	0.88[EUR][1000 genomes]
rs2619521	0.86[JPT][hapmap]
rs2619522	0.88[JPT][hapmap]
rs2619526	0.88[EUR][1000 genomes]
rs2619528	0.88[JPT][hapmap]
rs2619529	0.86[EUR][1000 genomes]
rs2619530	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2619533	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2619534	0.87[AMR][1000 genomes]
rs2619535	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2619540	0.88[EUR][1000 genomes]
rs2619541	0.88[EUR][1000 genomes]
rs2619544	0.88[EUR][1000 genomes]
rs2619545	0.88[JPT][hapmap]
rs2619546	0.87[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2619548	0.86[EUR][1000 genomes]
rs2619552	0.84[EUR][1000 genomes]
rs2743548	0.86[EUR][1000 genomes]
rs2743549	0.86[EUR][1000 genomes]
rs2743550	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2743551	0.87[AMR][1000 genomes]
rs2743552	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2743553	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2743853	0.86[EUR][1000 genomes]
rs2743854	0.87[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743857	0.88[JPT][hapmap]
rs2743858	0.88[EUR][1000 genomes]
rs2743859	0.88[EUR][1000 genomes]
rs2743860	0.88[EUR][1000 genomes]
rs2743861	0.82[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743864	0.88[EUR][1000 genomes]
rs2743865	0.85[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743866	0.87[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743867	0.82[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743869	0.85[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2743870	0.88[EUR][1000 genomes]
rs2743871	0.88[EUR][1000 genomes]
rs2743872	0.88[EUR][1000 genomes]
rs3778651	1.00[CEU][hapmap]
rs734129	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs760761	0.88[JPT][hapmap]
rs7752070	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7770921	0.86[EUR][1000 genomes]
rs875463	0.82[CEU][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9296975	1.00[CEU][hapmap]
rs9296977	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296978	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296979	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296980	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296981	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296984	0.87[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9296985	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296987	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9296988	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464793	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464794	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464795	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464797	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464801	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464802	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464803	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9464805	0.87[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs9464807	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476835	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9476836	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476837	0.82[CEU][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9476838	0.87[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9476839	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476840	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476841	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476842	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476844	0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476845	0.87[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476846	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476849	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476854	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476858	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476859	0.87[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476860	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9476863	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs9476865	0.81[EUR][1000 genomes]
rs9476866	0.88[EUR][1000 genomes]
rs9476867	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476868	0.88[EUR][1000 genomes]
rs9476869	0.88[EUR][1000 genomes]
rs9476883	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15492400-15527200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:15492800-15527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:15494800-15527000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr6:15495000-15527200	Strong transcription	Dnd41	blood
6	chr6:15495000-15529200	Strong transcription	Primary T cells from cord blood	blood
7	chr6:15495200-15525800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:15496000-15525600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:15496000-15526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:15496000-15528400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:15497400-15526600	Strong transcription	Fetal Intestine Large	intestine
12	chr6:15506000-15527000	Strong transcription	Fetal Intestine Small	intestine
13	chr6:15506600-15527400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:15507000-15533200	Weak transcription	HSMM	muscle
15	chr6:15507400-15529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:15509000-15525800	Weak transcription	Fetal Kidney	kidney
17	chr6:15509200-15527200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:15510000-15526800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:15510800-15527000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:15511600-15528200	Weak transcription	Right Atrium	heart
21	chr6:15512600-15525600	Strong transcription	HepG2	liver
22	chr6:15512600-15531000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:15512600-15536400	Weak transcription	Psoas Muscle	Psoas
24	chr6:15515200-15525600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:15515200-15527000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:15515800-15533600	Strong transcription	Thymus	Thymus
27	chr6:15516200-15525800	Strong transcription	Fetal Thymus	thymus
28	chr6:15517400-15527000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr6:15518400-15531400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:15519400-15534200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:15521800-15526600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:15522000-15525800	Strong transcription	K562	blood
33	chr6:15522200-15525600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:15522200-15527000	Strong transcription	Aorta	Aorta
35	chr6:15522600-15526800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr6:15522800-15526800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr6:15523000-15525600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr6:15523000-15527200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:15523000-15533800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:15523200-15525600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:15523200-15527000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr6:15523400-15526600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:15523400-15526800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:15523400-15527000	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:15523400-15528000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:15523400-15534000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:15523400-15534400	Weak transcription	HUVEC	blood vessel
48	chr6:15523600-15535800	Weak transcription	Small Intestine	intestine
49	chr6:15523600-15540000	Weak transcription	NHEK	skin
50	chr6:15523800-15525800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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