Variant report

Variant	rs9476846
Chromosome Location	chr6:15554767-15554768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15551478..15555185-chr6:15568450..15571050,3	K562	blood:
2	chr6:15553685..15556253-chr6:15569406..15571140,2	K562	blood:
3	chr6:15548804..15551756-chr6:15553738..15555396,2	K562	blood:
4	chr6:15553573..15555100-chr6:15595699..15598673,2	K562	blood:
5	chr6:15553506..15555784-chr6:15662229..15664519,3	K562	blood:

Variant related genes	Relation type
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1018381	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1018382	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1040410	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10949305	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752196	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11752598	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753919	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755055	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11757499	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759609	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13437303	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16876671	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1997679	0.95[ASN][1000 genomes]
rs2205852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619516	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619519	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619526	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619529	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619530	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619533	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619534	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2619535	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619540	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619541	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619544	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619546	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619548	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619552	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743548	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743549	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743550	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743551	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743853	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743854	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743858	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743859	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743860	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743861	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743864	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743865	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743866	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743867	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743869	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743870	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743871	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743872	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459408	0.95[ASN][1000 genomes]
rs6903159	0.95[ASN][1000 genomes]
rs734129	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752070	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7770921	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875463	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296976	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296977	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9296978	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296979	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296980	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9296981	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9296984	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9296985	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296987	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296988	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464793	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9464794	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464795	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9464801	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464802	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464803	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464805	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464807	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476835	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476836	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476837	0.89[EUR][1000 genomes]
rs9476838	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476839	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476840	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476841	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476842	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476844	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476854	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476858	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476859	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476860	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476863	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476865	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476866	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476867	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476868	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476869	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476883	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:15550400-15556400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:15551200-15554800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:15552000-15555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:15552000-15556800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:15552200-15555000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:15552200-15555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:15552200-15555200	Enhancers	K562	blood
10	chr6:15552200-15556600	Weak transcription	Esophagus	oesophagus
11	chr6:15552200-15569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:15552400-15555600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:15552400-15556200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:15552400-15556800	Weak transcription	Spleen	Spleen
15	chr6:15552400-15563000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:15552400-15577400	Weak transcription	Lung	lung
19	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:15552600-15555000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:15552600-15556800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:15552600-15557000	Weak transcription	Fetal Heart	heart
23	chr6:15552600-15568800	Weak transcription	Fetal Kidney	kidney
24	chr6:15552600-15569800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:15552800-15555400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:15552800-15555400	Weak transcription	Adipose Nuclei	Adipose
27	chr6:15553000-15555600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:15553000-15556200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:15553200-15555200	Weak transcription	HUVEC	blood vessel
30	chr6:15553400-15555400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:15553600-15556000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:15553600-15569600	Weak transcription	Left Ventricle	heart
33	chr6:15553800-15556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:15553800-15563800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:15554000-15555000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:15554000-15555400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:15554000-15555600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:15554000-15555800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:15554200-15555000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:15554200-15555200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:15554200-15555600	Weak transcription	Fetal Stomach	stomach
42	chr6:15554400-15554800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:15554400-15555200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:15554400-15555400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:15554400-15555400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:15554400-15577600	Weak transcription	Aorta	Aorta

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