Variant report

Variant	rs2743872
Chromosome Location	chr6:15622613-15622614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15210626..15213577-chr6:15621189..15623887,2	K562	blood:
2	chr6:15614240..15617962-chr6:15618192..15624237,8	K562	blood:
3	chr6:15555829..15558724-chr6:15620629..15623055,2	K562	blood:
4	chr6:15508040..15509994-chr6:15621432..15624350,2	K562	blood:
5	chr6:15619999..15626180-chr6:15626228..15631294,14	K562	blood:
6	chr6:15510035..15513200-chr6:15622325..15624212,4	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1018381	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018382	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040410	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949305	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752598	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753919	1.00[EUR][1000 genomes]
rs11755055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757499	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759609	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437303	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16876671	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997679	1.00[ASN][1000 genomes]
rs2205852	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619516	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619521	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2619522	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2619524	0.81[ASN][1000 genomes]
rs2619525	0.81[ASN][1000 genomes]
rs2619526	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619528	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2619529	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619530	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619533	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619534	0.95[ASN][1000 genomes]
rs2619535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619544	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619545	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2619546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619547	0.81[ASN][1000 genomes]
rs2619548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619552	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743548	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743549	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743551	0.95[ASN][1000 genomes]
rs2743552	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743553	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743856	0.81[ASN][1000 genomes]
rs2743857	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2743858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743859	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743864	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743870	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778651	0.82[CEU][hapmap]
rs6459408	1.00[ASN][1000 genomes]
rs6903159	1.00[ASN][1000 genomes]
rs734129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760761	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7752070	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756793	0.88[CEU][hapmap]
rs7770921	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875463	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9296975	0.82[CEU][hapmap]
rs9296976	0.88[EUR][1000 genomes]
rs9296977	0.86[EUR][1000 genomes]
rs9296978	0.92[EUR][1000 genomes]
rs9296979	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296980	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296981	1.00[EUR][1000 genomes]
rs9296984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296987	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296988	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464793	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464794	0.92[EUR][1000 genomes]
rs9464795	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464797	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464801	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464802	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464807	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476835	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476836	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9476837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs9476838	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9476839	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476840	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476841	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476842	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476844	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476846	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476849	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476854	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476860	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476866	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476867	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476868	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476869	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
3	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
4	chr6:15604800-15623600	Weak transcription	Right Ventricle	heart
5	chr6:15607200-15623400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:15609000-15628200	Weak transcription	HSMM	muscle
7	chr6:15609600-15627400	Weak transcription	HUVEC	blood vessel
8	chr6:15610400-15626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
10	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:15614800-15641600	Weak transcription	Lung	lung
12	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
13	chr6:15615200-15624000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:15615200-15626000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:15615200-15626000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:15615200-15641000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:15615200-15642200	Weak transcription	Thymus	Thymus
18	chr6:15615200-15662200	Weak transcription	Gastric	stomach
19	chr6:15615400-15623600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:15615400-15624000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:15615400-15628800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:15615600-15623600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:15615600-15624000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:15615600-15626600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:15615600-15639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:15616800-15622800	Weak transcription	Dnd41	blood
28	chr6:15616800-15623600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:15616800-15630200	Weak transcription	HepG2	liver
30	chr6:15616800-15631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:15616800-15632000	Weak transcription	Esophagus	oesophagus
32	chr6:15616800-15638600	Weak transcription	Psoas Muscle	Psoas
33	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
34	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:15617000-15622800	Weak transcription	Primary T cells from cord blood	blood
36	chr6:15617000-15626000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:15617000-15631400	Weak transcription	Fetal Intestine Large	intestine
38	chr6:15618800-15626200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:15620400-15623400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:15620600-15623800	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr6:15620600-15623800	Enhancers	Fetal Muscle Leg	muscle
42	chr6:15620800-15623000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr6:15620800-15623000	Enhancers	Fetal Kidney	kidney
44	chr6:15620800-15623600	Enhancers	Fetal Heart	heart
45	chr6:15621000-15627800	Weak transcription	Fetal Brain Female	brain
46	chr6:15621400-15623000	Enhancers	Primary hematopoietic stem cells	blood
47	chr6:15621400-15623000	Enhancers	HMEC	breast
48	chr6:15621400-15623400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:15621400-15623600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:15621400-15623800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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