Variant report

Variant	rs9476868
Chromosome Location	chr6:15617372-15617373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15614240..15617962-chr6:15618192..15624237,8	K562	blood:
2	chr6:15610180..15611688-chr6:15615613..15618447,2	K562	blood:
3	chr6:15500022..15501812-chr6:15616208..15617940,2	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1018381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018382	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040410	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949305	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752196	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752598	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753919	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755055	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757499	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759609	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437303	0.92[EUR][1000 genomes]
rs16876671	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997679	1.00[ASN][1000 genomes]
rs2205852	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619516	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619522	0.81[ASN][1000 genomes]
rs2619524	0.81[ASN][1000 genomes]
rs2619525	0.81[ASN][1000 genomes]
rs2619526	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619529	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619530	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619533	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619534	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619535	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619545	0.81[ASN][1000 genomes]
rs2619546	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619547	0.81[ASN][1000 genomes]
rs2619548	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743548	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743549	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743550	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743551	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743552	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743553	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743853	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743856	0.81[ASN][1000 genomes]
rs2743858	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743859	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743860	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743872	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459408	1.00[ASN][1000 genomes]
rs6903159	1.00[ASN][1000 genomes]
rs734129	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752070	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770921	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875463	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296976	0.88[EUR][1000 genomes]
rs9296977	0.86[EUR][1000 genomes]
rs9296978	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9296979	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296980	0.94[EUR][1000 genomes]
rs9296981	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296984	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296985	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296987	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296988	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464793	0.90[EUR][1000 genomes]
rs9464794	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9464795	0.88[EUR][1000 genomes]
rs9464797	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464801	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464802	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464803	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464805	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464807	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476835	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476836	0.90[EUR][1000 genomes]
rs9476837	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9476838	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476839	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476840	0.98[EUR][1000 genomes]
rs9476841	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476842	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476844	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476845	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476846	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476849	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476854	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476858	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476859	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476860	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476863	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476865	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476866	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476867	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15593800-15621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:15594000-15621800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:15596400-15621000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:15596400-15621800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:15596600-15621800	Weak transcription	Ovary	ovary
7	chr6:15596800-15621800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:15597000-15621600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
10	chr6:15597800-15618400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
12	chr6:15601000-15621800	Weak transcription	Liver	Liver
13	chr6:15604800-15623600	Weak transcription	Right Ventricle	heart
14	chr6:15606800-15618600	Weak transcription	Brain Substantia Nigra	brain
15	chr6:15607200-15621400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:15607200-15621800	Weak transcription	Small Intestine	intestine
17	chr6:15607200-15623400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:15607400-15622000	Weak transcription	Fetal Brain Male	brain
19	chr6:15608600-15621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:15608800-15621600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:15609000-15621600	Weak transcription	NHLF	lung
22	chr6:15609000-15622000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:15609000-15622200	Weak transcription	NHDF-Ad	bronchial
24	chr6:15609000-15628200	Weak transcription	HSMM	muscle
25	chr6:15609200-15621400	Weak transcription	Adipose Nuclei	Adipose
26	chr6:15609200-15621400	Weak transcription	NHEK	skin
27	chr6:15609600-15627400	Weak transcription	HUVEC	blood vessel
28	chr6:15610000-15620800	Weak transcription	Fetal Heart	heart
29	chr6:15610400-15626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
31	chr6:15611600-15621600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:15611800-15621600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:15612000-15621600	Weak transcription	HSMMtube	muscle
35	chr6:15612200-15620600	Weak transcription	Fetal Brain Female	brain
36	chr6:15612600-15621400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:15613000-15621400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:15613200-15621600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:15614800-15621400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:15614800-15621800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:15614800-15641600	Weak transcription	Lung	lung
42	chr6:15615000-15618800	Weak transcription	Primary B cells from cord blood	blood
43	chr6:15615000-15621400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:15615000-15621600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:15615000-15621800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
47	chr6:15615200-15620600	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:15615200-15620600	Weak transcription	K562	blood
49	chr6:15615200-15621400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:15615200-15621400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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