Variant report

Variant	rs2743858
Chromosome Location	chr6:15648841-15648842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15642319..15645214-chr6:15647219..15649863,3	K562	blood:
2	chr6:15642319..15645214-chr6:15647219..15649442,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1018381	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018382	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040410	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949305	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752196	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752598	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753919	1.00[EUR][1000 genomes]
rs11755055	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757499	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759609	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437303	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16876671	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997679	1.00[ASN][1000 genomes]
rs2205852	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619522	0.81[ASN][1000 genomes]
rs2619524	0.81[ASN][1000 genomes]
rs2619525	0.81[ASN][1000 genomes]
rs2619526	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619529	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619530	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619533	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2619534	0.95[ASN][1000 genomes]
rs2619535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619544	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619545	0.81[ASN][1000 genomes]
rs2619546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619547	0.81[ASN][1000 genomes]
rs2619548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619552	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743548	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743549	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743550	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743551	0.95[ASN][1000 genomes]
rs2743552	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743553	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743854	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743856	0.81[ASN][1000 genomes]
rs2743859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743864	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743866	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743869	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743870	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459408	1.00[ASN][1000 genomes]
rs6903159	1.00[ASN][1000 genomes]
rs734129	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752070	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770921	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875463	1.00[EUR][1000 genomes]
rs9296976	0.88[EUR][1000 genomes]
rs9296977	0.86[EUR][1000 genomes]
rs9296978	0.92[EUR][1000 genomes]
rs9296979	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296980	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296981	1.00[EUR][1000 genomes]
rs9296984	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296985	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296987	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296988	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464793	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464794	0.92[EUR][1000 genomes]
rs9464795	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464797	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464801	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464802	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464803	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464805	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464807	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476835	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476836	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9476837	0.92[EUR][1000 genomes]
rs9476838	1.00[EUR][1000 genomes]
rs9476839	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476840	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476841	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476842	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476844	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476845	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476846	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476849	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476854	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476858	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476859	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476860	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476863	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476866	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476867	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476868	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476869	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
2	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
3	chr6:15615200-15662200	Weak transcription	Gastric	stomach
4	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
5	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
7	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:15628600-15662000	Weak transcription	NHLF	lung
10	chr6:15629400-15649200	Weak transcription	HSMM	muscle
11	chr6:15629400-15650400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:15629600-15654000	Weak transcription	Osteobl	bone
13	chr6:15629600-15657000	Weak transcription	K562	blood
14	chr6:15629600-15661800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:15634400-15657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:15634600-15657600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:15638800-15649800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
22	chr6:15641000-15649600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:15641000-15651600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:15642000-15662000	Weak transcription	Brain Angular Gyrus	brain
25	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
26	chr6:15642400-15661400	Weak transcription	Spleen	Spleen
27	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
28	chr6:15642800-15650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:15642800-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:15642800-15662000	Weak transcription	Lung	lung
31	chr6:15642800-15662000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:15643000-15658600	Weak transcription	Fetal Thymus	thymus
33	chr6:15643000-15662000	Weak transcription	Fetal Stomach	stomach
34	chr6:15643800-15649400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:15644400-15649200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:15644400-15658600	Weak transcription	Psoas Muscle	Psoas
37	chr6:15644400-15661800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:15644400-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:15644600-15649000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:15644800-15649200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:15644800-15651200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:15644800-15658600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:15644800-15661800	Weak transcription	HepG2	liver
44	chr6:15644800-15662000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:15644800-15662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:15645600-15654800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:15645600-15661800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:15646000-15653400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr6:15646000-15662000	Weak transcription	NHDF-Ad	bronchial
50	chr6:15646200-15662000	Weak transcription	Fetal Muscle Trunk	muscle

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