Variant report

Variant	rs2743551
Chromosome Location	chr6:15569559-15569560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15569507..15572104-chr6:15574180..15578987,6	K562	blood:
2	chr6:15551478..15555185-chr6:15568450..15571050,3	K562	blood:
3	chr6:15553685..15556253-chr6:15569406..15571140,2	K562	blood:
4	chr6:15568618..15570956-chr6:16004437..16007053,2	K562	blood:
5	chr6:15493055..15494840-chr6:15568321..15570199,2	K562	blood:
6	chr6:15568715..15571143-chr6:15594393..15596113,2	K562	blood:
7	chr6:15562390..15566134-chr6:15567987..15569843,3	K562	blood:
8	chr6:15568594..15571158-chr6:15619622..15621812,2	K562	blood:

No data

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1018381	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1018382	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1040410	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10949305	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11752196	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11752598	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11753919	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11755055	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11757499	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11759609	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13437303	0.82[AMR][1000 genomes]
rs16876671	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1997679	0.95[ASN][1000 genomes]
rs2205852	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2619516	0.95[ASN][1000 genomes]
rs2619519	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619521	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2619522	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2619526	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619528	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2619529	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619530	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2619533	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2619534	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619535	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619540	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619541	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619544	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2619545	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2619546	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2619548	0.95[ASN][1000 genomes]
rs2619552	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743548	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743549	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743550	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743552	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743553	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743853	0.95[ASN][1000 genomes]
rs2743854	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743857	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2743858	0.95[ASN][1000 genomes]
rs2743859	0.95[ASN][1000 genomes]
rs2743860	0.95[ASN][1000 genomes]
rs2743861	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2743864	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743865	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743866	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743867	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743869	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743870	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743871	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2743872	0.95[ASN][1000 genomes]
rs6459408	0.95[ASN][1000 genomes]
rs6903159	0.95[ASN][1000 genomes]
rs734129	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs760761	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7752070	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7770921	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs875463	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9296976	0.87[AMR][1000 genomes]
rs9296977	0.87[AMR][1000 genomes]
rs9296978	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9296979	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9296980	0.82[AMR][1000 genomes]
rs9296981	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9296984	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9296985	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9296987	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9296988	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464793	0.82[AMR][1000 genomes]
rs9464794	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9464795	0.82[AMR][1000 genomes]
rs9464797	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9464801	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464802	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464803	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464805	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464807	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476835	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9476836	0.82[AMR][1000 genomes]
rs9476837	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9476838	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9476839	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9476840	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9476841	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9476842	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9476844	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476845	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476846	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476849	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476854	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476858	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476859	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476860	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476863	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476865	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476866	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476867	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476868	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476869	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476883	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:15552400-15577400	Weak transcription	Lung	lung
5	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15552600-15569800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:15553600-15569600	Weak transcription	Left Ventricle	heart
8	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
9	chr6:15555000-15573200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:15556400-15571800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:15556600-15570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15556800-15571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
14	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:15560800-15569800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:15561600-15578200	Weak transcription	Pancreas	Pancrea
17	chr6:15562000-15572800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
19	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:15562400-15574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:15563400-15577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:15563400-15577800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:15564000-15569800	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:15564000-15574400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:15567600-15569600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:15568200-15570400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:15568800-15570200	Enhancers	Fetal Kidney	kidney
33	chr6:15569000-15570000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:15569000-15570000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:15569000-15570200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:15569000-15570200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:15569000-15570200	Flanking Active TSS	K562	blood
38	chr6:15569000-15570400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr6:15569200-15569800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:15569200-15569800	Enhancers	Placenta	Placenta
41	chr6:15569200-15570000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr6:15569200-15570000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:15569200-15570000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:15569200-15570400	Enhancers	Fetal Heart	heart
45	chr6:15569200-15570400	Enhancers	Fetal Lung	lung
46	chr6:15569400-15569800	Enhancers	Small Intestine	intestine
47	chr6:15569400-15570000	Active TSS	Dnd41	blood
48	chr6:15569400-15570800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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