Variant report

Variant	rs2743863
Chromosome Location	chr6:15642576-15642577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15640927..15643697-chr6:16153681..16155623,2	MCF-7	breast:
2	chr6:15642319..15645214-chr6:15647219..15649863,3	K562	blood:
3	chr6:15638147..15639821-chr6:15640397..15642990,2	MCF-7	breast:
4	chr6:15623198..15625470-chr6:15641249..15644196,2	K562	blood:
5	chr6:15642319..15645214-chr6:15647219..15649442,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1474605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2005976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619524	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2743856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2743857	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
2	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
3	chr6:15615200-15662200	Weak transcription	Gastric	stomach
4	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
6	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
8	chr6:15622200-15643600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:15623600-15643200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:15628600-15662000	Weak transcription	NHLF	lung
13	chr6:15629400-15642600	Weak transcription	Fetal Lung	lung
14	chr6:15629400-15649200	Weak transcription	HSMM	muscle
15	chr6:15629400-15650400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:15629600-15654000	Weak transcription	Osteobl	bone
17	chr6:15629600-15657000	Weak transcription	K562	blood
18	chr6:15629600-15661800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:15630200-15642800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:15630400-15643000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:15630800-15643600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:15632200-15643600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:15633400-15643600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:15634400-15657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:15634600-15657600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:15637400-15643800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:15637600-15643600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:15638200-15643800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:15638800-15642800	Strong transcription	Primary T cells from cord blood	blood
33	chr6:15638800-15649800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:15639400-15642600	Weak transcription	Fetal Thymus	thymus
35	chr6:15639400-15642800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:15639400-15642800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:15639400-15644000	Weak transcription	A549	lung
38	chr6:15639400-15648400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
40	chr6:15639600-15642800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr6:15639800-15643600	Weak transcription	HepG2	liver
42	chr6:15640600-15646200	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr6:15640800-15646200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr6:15641000-15642800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:15641000-15642800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr6:15641000-15643000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:15641000-15643000	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr6:15641000-15649600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:15641000-15651600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:15641600-15642800	Genic enhancers	Lung	lung

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