Variant report

Variant	rs1475606
Chromosome Location	chr10:89955029-89955030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89954251..89956683-chr10:89959327..89961905,2	K562	blood:
2	chr10:89940111..89941836-chr10:89953504..89955306,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11202678	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12264266	0.95[EUR][1000 genomes]
rs472364	0.95[EUR][1000 genomes]
rs4933473	0.83[EUR][1000 genomes]
rs531325	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs533648	0.87[EUR][1000 genomes]
rs574006	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs600195	0.95[EUR][1000 genomes]
rs644440	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs652517	0.87[EUR][1000 genomes]
rs868872	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89946200-89955200	Weak transcription	Aorta	Aorta
2	chr10:89946400-89955200	Weak transcription	Placenta	Placenta
3	chr10:89946400-89955200	Weak transcription	Psoas Muscle	Psoas
4	chr10:89949800-89956200	Enhancers	Thymus	Thymus
5	chr10:89950400-89956400	Enhancers	Fetal Thymus	thymus
6	chr10:89950600-89956200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89950800-89955600	Enhancers	Primary T cells from cord blood	blood
8	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:89951800-89956600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:89952200-89955400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:89952400-89955600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:89952400-89956400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:89952600-89955200	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:89952600-89955400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:89952800-89955200	Enhancers	Primary B cells from cord blood	blood
16	chr10:89952800-89955800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:89953200-89955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:89953200-89956200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:89953600-89955400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:89954200-89955200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:89954200-89955200	Weak transcription	Lung	lung
22	chr10:89954200-89955200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:89954200-89955600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:89954200-89956800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:89954200-89957600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:89954400-89955200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:89954400-89955600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:89954400-89955600	Enhancers	Dnd41	blood
29	chr10:89954400-89955800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr10:89954400-89957800	Weak transcription	NHEK	skin
31	chr10:89954600-89955200	Weak transcription	Left Ventricle	heart
32	chr10:89954800-89955800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:89954800-89956600	Enhancers	Fetal Stomach	stomach
34	chr10:89954800-89957600	Weak transcription	HMEC	breast
35	chr10:89955000-89955400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:89955000-89955400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:89955000-89955400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:89955000-89955400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:89955000-89955400	Enhancers	Right Atrium	heart
40	chr10:89955000-89955400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr10:89955000-89955800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:89955000-89956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:89955000-89956400	Enhancers	Fetal Lung	lung

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