Variant report

Variant	rs4933473
Chromosome Location	chr10:89915594-89915595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11202678	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264266	0.82[EUR][1000 genomes]
rs1475606	0.83[EUR][1000 genomes]
rs472364	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs531325	0.90[EUR][1000 genomes]
rs533648	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs574006	0.88[EUR][1000 genomes]
rs600195	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs644440	0.88[EUR][1000 genomes]
rs652517	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs868872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv982855	chr10:89909945-89918540	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89908400-89917200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:89909200-89918600	Enhancers	Hela-S3	cervix
3	chr10:89909200-89919200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:89909200-89919200	Enhancers	NHDF-Ad	bronchial
5	chr10:89909400-89916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:89909400-89919200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89910200-89917400	Weak transcription	HSMMtube	muscle
8	chr10:89912600-89916200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:89912600-89916200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:89912800-89916200	Weak transcription	Ovary	ovary
11	chr10:89912800-89916200	Weak transcription	A549	lung
12	chr10:89912800-89917400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:89912800-89917400	Weak transcription	Small Intestine	intestine
14	chr10:89912800-89917600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:89912800-89918800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:89912800-89925000	Weak transcription	Left Ventricle	heart
17	chr10:89913000-89916000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:89913000-89917200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:89913000-89917600	Weak transcription	Dnd41	blood
20	chr10:89913000-89924400	Weak transcription	Right Atrium	heart
21	chr10:89913200-89915800	Weak transcription	HSMM	muscle
22	chr10:89913200-89916000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:89913200-89916000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:89913200-89917200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:89913200-89917400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:89913400-89915800	Weak transcription	HUVEC	blood vessel
27	chr10:89913400-89917400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:89913600-89916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:89914000-89918000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:89914000-89919200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:89914400-89918200	Enhancers	NHLF	lung
32	chr10:89914800-89915800	Weak transcription	NH-A	brain
33	chr10:89914800-89916800	Weak transcription	Pancreas	Pancrea
34	chr10:89914800-89917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:89914800-89917200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:89914800-89918800	Enhancers	Osteobl	bone
37	chr10:89915000-89916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:89915000-89916000	Weak transcription	HMEC	breast
39	chr10:89915000-89916200	Weak transcription	NHEK	skin
40	chr10:89915200-89929600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:89915400-89915800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:89915400-89916200	Weak transcription	Rectal Mucosa Donor 31	rectum

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