Variant report

Variant	rs600195
Chromosome Location	chr10:89944189-89944190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11202678	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12264266	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1475606	0.95[EUR][1000 genomes]
rs472364	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933473	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs531325	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs533648	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs574006	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs644440	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs652517	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs868872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89938000-89946000	Weak transcription	Aorta	Aorta
2	chr10:89939000-89950000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89942200-89945200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:89942200-89946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:89942600-89945600	Weak transcription	Osteobl	bone
6	chr10:89943000-89945000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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