Variant report

Variant	rs1476590
Chromosome Location	chr8:91064036-91064037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10095826	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs10100369	0.80[CEU][hapmap]
rs10109454	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1011682	0.82[EUR][1000 genomes]
rs1011683	0.83[EUR][1000 genomes]
rs10956427	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16786	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1805788	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1805789	0.80[CHB][hapmap]
rs1805793	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805796	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805802	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805806	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805807	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1805808	0.82[EUR][1000 genomes]
rs1805809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805833	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805841	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805869	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805871	0.84[CEU][hapmap];0.80[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1805889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881469	0.82[JPT][hapmap]
rs2063976	0.80[AMR][1000 genomes]
rs2072656	0.83[EUR][1000 genomes]
rs2074593	0.82[EUR][1000 genomes]
rs2097825	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2107466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2189618	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189619	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246157	0.82[JPT][hapmap]
rs2293775	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2697674	0.81[JPT][hapmap]
rs2697675	0.81[JPT][hapmap]
rs2734823	0.82[JPT][hapmap]
rs3087750	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34394839	0.81[EUR][1000 genomes]
rs34915823	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3758146	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs4961165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961167	0.81[EUR][1000 genomes]
rs4961168	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4961169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470522	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs6993054	0.83[EUR][1000 genomes]
rs7010210	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011299	0.82[EUR][1000 genomes]
rs709816	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7822272	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7822950	0.82[EUR][1000 genomes]
rs867185	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1476590	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91015600-91066200	Weak transcription	Hela-S3	cervix
2	chr8:91018600-91065400	Weak transcription	HMEC	breast
3	chr8:91027600-91066800	Weak transcription	NHEK	skin
4	chr8:91029400-91066000	Weak transcription	HUVEC	blood vessel
5	chr8:91032000-91064800	Weak transcription	NHLF	lung
6	chr8:91033800-91064400	Weak transcription	NH-A	brain
7	chr8:91049600-91066800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:91049800-91067200	Weak transcription	Osteobl	bone
9	chr8:91050200-91065000	Weak transcription	Small Intestine	intestine
10	chr8:91050200-91066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:91052400-91067200	Weak transcription	Brain Substantia Nigra	brain
12	chr8:91052400-91069200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:91052600-91067000	Weak transcription	Brain Angular Gyrus	brain
14	chr8:91053000-91065000	Weak transcription	Psoas Muscle	Psoas
15	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:91055800-91067200	Weak transcription	NHDF-Ad	bronchial
17	chr8:91055800-91068000	Weak transcription	HSMM	muscle
18	chr8:91056600-91067000	Weak transcription	Fetal Heart	heart
19	chr8:91057200-91066400	Weak transcription	GM12878-XiMat	blood
20	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:91058000-91066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:91058000-91067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:91058000-91071400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:91058200-91067400	Weak transcription	Fetal Kidney	kidney
26	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:91058400-91065000	Weak transcription	Thymus	Thymus
28	chr8:91058400-91066800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:91058400-91067000	Weak transcription	Pancreas	Pancrea
30	chr8:91058400-91067000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:91058400-91067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:91058400-91067600	Weak transcription	Aorta	Aorta
33	chr8:91058400-91068200	Weak transcription	Lung	lung
34	chr8:91058400-91069000	Weak transcription	Placenta	Placenta
35	chr8:91058600-91065000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr8:91058600-91065000	Weak transcription	Ovary	ovary
37	chr8:91058600-91065000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:91058600-91065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:91058600-91066400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:91058600-91066400	Weak transcription	Brain Germinal Matrix	brain
41	chr8:91058600-91066400	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:91058600-91066600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:91058600-91067000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr8:91058600-91067200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr8:91058600-91067600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr8:91058600-91067600	Weak transcription	Fetal Intestine Small	intestine
47	chr8:91058600-91069000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr8:91058600-91069000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:91058600-91069600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:91058600-91069800	Weak transcription	Brain Inferior Temporal Lobe	brain

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