Variant report

Variant	rs34915823
Chromosome Location	chr8:91101879-91101880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91092897..91095397-chr8:91099326..91102045,2	K562	blood:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10088137	0.85[EUR][1000 genomes]
rs10094625	0.82[EUR][1000 genomes]
rs10095826	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10100369	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10100993	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10109405	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10113507	0.88[EUR][1000 genomes]
rs1073074	0.81[EUR][1000 genomes]
rs10956427	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12171665	0.85[EUR][1000 genomes]
rs1476590	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1554927	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1805864	0.80[EUR][1000 genomes]
rs1805869	0.80[EUR][1000 genomes]
rs1805871	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805874	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2049815	0.81[EUR][1000 genomes]
rs2049816	0.81[EUR][1000 genomes]
rs2063976	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103432	0.88[EUR][1000 genomes]
rs2107466	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2142093	0.86[EUR][1000 genomes]
rs2142094	0.86[EUR][1000 genomes]
rs2178830	0.85[EUR][1000 genomes]
rs2189261	0.83[EUR][1000 genomes]
rs2189618	0.81[EUR][1000 genomes]
rs2205108	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2840205	0.84[EUR][1000 genomes]
rs3087750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35044745	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758146	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961169	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4961171	0.84[EUR][1000 genomes]
rs6994668	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7010368	0.84[EUR][1000 genomes]
rs7011734	0.84[EUR][1000 genomes]
rs7459845	0.80[EUR][1000 genomes]
rs7459846	0.80[EUR][1000 genomes]
rs7831184	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9774207	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34915823	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91100600-91102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91100600-91102400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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