Variant report

Variant	rs9774207
Chromosome Location	chr2:224059006-224059007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10092098	0.85[EUR][1000 genomes]
rs10095826	0.83[EUR][1000 genomes]
rs10104321	0.85[EUR][1000 genomes]
rs10216992	0.83[EUR][1000 genomes]
rs10755930	0.84[EUR][1000 genomes]
rs12171665	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547667	0.88[EUR][1000 genomes]
rs12549107	0.85[EUR][1000 genomes]
rs12679577	0.82[EUR][1000 genomes]
rs13277204	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1800645	0.85[EUR][1000 genomes]
rs1805870	0.82[EUR][1000 genomes]
rs1805874	0.81[EUR][1000 genomes]
rs1805876	0.85[EUR][1000 genomes]
rs1805877	0.84[EUR][1000 genomes]
rs2063976	0.81[EUR][1000 genomes]
rs2091887	0.81[EUR][1000 genomes]
rs2091888	0.83[EUR][1000 genomes]
rs2091900	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142093	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2142094	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28380191	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3087750	0.82[EUR][1000 genomes]
rs34915823	0.82[EUR][1000 genomes]
rs35044745	0.81[EUR][1000 genomes]
rs3758146	0.80[EUR][1000 genomes]
rs4960982	0.81[EUR][1000 genomes]
rs6470668	0.84[EUR][1000 genomes]
rs6470671	0.85[EUR][1000 genomes]
rs6470708	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470709	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470713	0.81[EUR][1000 genomes]
rs6988013	0.85[EUR][1000 genomes]
rs6994202	0.85[EUR][1000 genomes]
rs71528739	0.82[EUR][1000 genomes]
rs7459441	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7459577	0.85[EUR][1000 genomes]
rs7459845	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459846	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7460025	0.82[EUR][1000 genomes]
rs7461859	0.85[EUR][1000 genomes]
rs7463278	0.83[EUR][1000 genomes]
rs7463923	0.83[EUR][1000 genomes]
rs7465539	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815279	0.86[EUR][1000 genomes]
rs7821408	0.85[EUR][1000 genomes]
rs9297784	0.81[EUR][1000 genomes]
rs988934	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433511	chr2:224056536-224954765	Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9774207	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:224053000-224061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:224056000-224061000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links