Variant report

Variant	rs2091900
Chromosome Location	chr8:91103489-91103490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10092098	0.81[EUR][1000 genomes]
rs10104321	0.81[EUR][1000 genomes]
rs12171665	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12549107	0.81[EUR][1000 genomes]
rs13277204	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1800645	0.81[EUR][1000 genomes]
rs1805876	0.81[EUR][1000 genomes]
rs2142093	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2142094	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28380191	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470671	0.81[EUR][1000 genomes]
rs6470708	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6470709	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6994202	0.81[EUR][1000 genomes]
rs7459441	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7459577	0.81[EUR][1000 genomes]
rs7459845	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7459846	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7461859	0.81[EUR][1000 genomes]
rs7463278	0.81[EUR][1000 genomes]
rs7463923	0.81[EUR][1000 genomes]
rs7465539	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7815279	0.82[EUR][1000 genomes]
rs7821408	0.81[EUR][1000 genomes]
rs9774207	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs988934	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2091900	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91102600-91104600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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