Variant report

Variant	rs7459846
Chromosome Location	chr8:91110322-91110323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90996132..90998933-chr8:91109607..91112377,2	K562	blood:
2	chr8:91109881..91112864-chr8:91114233..91115750,2	K562	blood:
3	chr8:91110151..91112011-chr8:91117979..91120218,2	K562	blood:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10088137	0.81[CEU][hapmap]
rs10092098	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10095826	0.87[CEU][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs10100369	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10104321	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs1011682	0.86[CEU][hapmap]
rs1011683	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs10216992	0.80[EUR][1000 genomes]
rs1061302	0.85[CEU][hapmap]
rs1063045	0.85[CEU][hapmap]
rs10755930	0.82[EUR][1000 genomes]
rs10956375	0.86[CEU][hapmap]
rs11782032	0.90[CEU][hapmap]
rs12171665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547667	0.85[EUR][1000 genomes]
rs12549107	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12679577	0.90[CEU][hapmap]
rs13265193	0.81[CEU][hapmap]
rs13275276	0.86[CEU][hapmap]
rs13277204	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13278453	0.85[CEU][hapmap]
rs13312935	0.86[CEU][hapmap]
rs1554927	0.81[EUR][1000 genomes]
rs1800645	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs1805790	0.86[CEU][hapmap]
rs1805794	0.85[CEU][hapmap]
rs1805795	0.86[CEU][hapmap]
rs1805797	0.85[CEU][hapmap]
rs1805799	0.85[CEU][hapmap]
rs1805800	0.86[CEU][hapmap]
rs1805808	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs1805818	0.85[CEU][hapmap]
rs1805844	0.86[CEU][hapmap]
rs1805870	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs1805871	0.87[CEU][hapmap]
rs1805874	0.81[CEU][hapmap]
rs1805876	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs1805877	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2073635	0.85[CEU][hapmap]
rs2074596	0.80[CEU][hapmap]
rs2091887	0.90[CEU][hapmap]
rs2091888	0.86[EUR][1000 genomes]
rs2091900	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2097825	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs2107465	0.80[CEU][hapmap]
rs2142093	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2142094	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2205108	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2234744	0.85[CEU][hapmap]
rs2267543	0.80[CEU][hapmap]
rs2280780	0.86[CEU][hapmap]
rs2308962	0.85[CEU][hapmap]
rs2339025	0.86[CEU][hapmap]
rs28380191	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3087750	0.80[EUR][1000 genomes]
rs34915823	0.80[EUR][1000 genomes]
rs3736639	0.86[CEU][hapmap]
rs3758146	0.87[CEU][hapmap];0.92[YRI][hapmap]
rs4961166	0.90[CEU][hapmap]
rs6470523	0.86[CEU][hapmap]
rs6470524	0.86[CEU][hapmap]
rs6470668	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs6470671	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6470708	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470709	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470713	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs6985793	0.80[CEU][hapmap]
rs6987873	0.86[CEU][hapmap]
rs6988013	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6990969	0.85[CEU][hapmap]
rs6991811	0.86[CEU][hapmap]
rs6993054	0.95[CEU][hapmap];0.83[CHB][hapmap]
rs6994202	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6994668	0.80[EUR][1000 genomes]
rs7006322	0.86[CEU][hapmap]
rs7011299	0.86[CEU][hapmap]
rs7012846	0.80[CEU][hapmap]
rs7018118	0.86[CEU][hapmap]
rs741777	0.86[CEU][hapmap]
rs741778	0.81[CEU][hapmap]
rs7459441	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7459577	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7459845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7460025	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7461859	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7463278	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs7463923	0.86[EUR][1000 genomes]
rs7465539	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815279	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs7816839	0.80[CEU][hapmap]
rs7821408	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7822272	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs7829246	0.85[CEU][hapmap]
rs7831184	0.81[EUR][1000 genomes]
rs926092	0.85[CEU][hapmap]
rs9297784	0.84[EUR][1000 genomes]
rs9649958	0.81[CEU][hapmap]
rs9774207	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792335	0.85[CEU][hapmap]
rs988934	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7459846	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91110000-91114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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