Variant report

Variant	rs2205108
Chromosome Location	chr8:91136078-91136079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91134530..91136835-chr8:91178960..91180753,2	K562	blood:
2	chr1:245027270..245028019-chr8:91135650..91136189,2	MCF-7	breast:
3	chr8:91126270..91128899-chr8:91135979..91138410,2	K562	blood:

Variant related genes	Relation type
ENSG00000153187	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10088137	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10088826	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10094625	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10095826	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10100369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10100993	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107297	0.82[EUR][1000 genomes]
rs10109405	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10109454	0.83[MEX][hapmap]
rs10113507	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1073074	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11782032	0.81[CEU][hapmap]
rs12171665	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs13277204	0.83[EUR][1000 genomes]
rs1554927	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805793	0.83[MEX][hapmap]
rs1805796	0.83[MEX][hapmap]
rs1805801	0.83[MEX][hapmap]
rs1805805	0.90[LWK][hapmap]
rs1805870	0.85[CEU][hapmap]
rs1805871	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs1805874	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2049815	0.88[EUR][1000 genomes]
rs2049816	0.88[EUR][1000 genomes]
rs2063976	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2103432	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2103441	0.81[ASN][1000 genomes]
rs2107466	0.83[MEX][hapmap]
rs2142093	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2142094	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2178830	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2189261	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2293775	0.83[CEU][hapmap]
rs28380191	0.85[EUR][1000 genomes]
rs2840205	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3087750	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34915823	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35044745	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3758146	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4961166	0.81[CEU][hapmap]
rs4961170	0.82[EUR][1000 genomes]
rs4961171	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6470708	0.83[EUR][1000 genomes]
rs6470709	0.83[EUR][1000 genomes]
rs6470748	0.82[EUR][1000 genomes]
rs6994668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7010368	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7011734	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs709816	0.83[MEX][hapmap]
rs717873	0.90[LWK][hapmap]
rs7459441	0.83[EUR][1000 genomes]
rs7459845	0.81[EUR][1000 genomes]
rs7459846	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7465539	0.83[EUR][1000 genomes]
rs7831184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867185	0.83[MEX][hapmap]
rs978953	0.82[EUR][1000 genomes]
rs988934	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2205108	DCAF4L2	cis	parietal	SCAN
rs2205108	DECR1	cis	cerebellum	SCAN
rs2205108	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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