Variant report

Variant	rs1805874
Chromosome Location	chr8:91082062-91082063
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10088137	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10088826	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs10094625	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10095826	0.95[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10100369	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10100993	0.86[EUR][1000 genomes]
rs10104321	0.91[LWK][hapmap]
rs10109405	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10109454	0.81[TSI][hapmap]
rs10113507	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1073074	0.82[EUR][1000 genomes]
rs11782032	0.81[CEU][hapmap]
rs12171665	0.81[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1554927	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805793	0.81[TSI][hapmap]
rs1805796	0.81[TSI][hapmap]
rs1805801	0.81[TSI][hapmap]
rs1805868	0.81[TSI][hapmap]
rs1805870	0.85[CEU][hapmap]
rs1805871	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805889	0.81[TSI][hapmap]
rs2049815	0.82[EUR][1000 genomes]
rs2049816	0.82[EUR][1000 genomes]
rs2063976	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103432	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2107466	0.81[TSI][hapmap]
rs2142093	0.86[CEU][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs2142094	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2178830	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2189261	0.84[EUR][1000 genomes]
rs2205108	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2293775	0.83[CEU][hapmap]
rs2840205	0.85[EUR][1000 genomes]
rs3087750	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34915823	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35044745	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758146	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961166	0.81[CEU][hapmap]
rs4961171	0.85[EUR][1000 genomes]
rs6994202	0.81[LWK][hapmap]
rs6994668	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7010368	0.85[EUR][1000 genomes]
rs7011734	0.85[EUR][1000 genomes]
rs709816	0.81[TSI][hapmap]
rs7459846	0.81[CEU][hapmap]
rs7815279	0.81[LWK][hapmap]
rs7831184	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs867185	0.81[TSI][hapmap]
rs9774207	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1805874	DCAF4L2	cis	parietal	SCAN
rs1805874	NBN	Cis_1M	lymphoblastoid	RTeQTL
rs1805874	DECR1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:91059000-91084800	Weak transcription	Brain Anterior Caudate	brain
4	chr8:91066200-91083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:91073400-91093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:91075000-91091000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:91075200-91085800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:91078400-91090200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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