Variant report

Variant	rs35044745
Chromosome Location	chr8:91086396-91086397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91085654..91087463-chr8:91095150..91097801,2	K562	blood:
2	chr8:91085963..91088599-chr8:91096301..91098600,2	K562	blood:
3	chr8:91084663..91089798-chr8:91090072..91094728,5	K562	blood:
4	chr8:91085527..91087816-chr8:91089480..91091130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10088137	0.86[EUR][1000 genomes]
rs10094625	0.83[EUR][1000 genomes]
rs10095826	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10100369	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10100993	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10109405	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10113507	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1073074	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12171665	0.83[EUR][1000 genomes]
rs1554927	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805871	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805874	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049815	0.82[EUR][1000 genomes]
rs2049816	0.82[EUR][1000 genomes]
rs2063976	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103432	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2142093	0.87[EUR][1000 genomes]
rs2142094	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2178830	0.86[EUR][1000 genomes]
rs2189261	0.84[EUR][1000 genomes]
rs2205108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2840205	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3087750	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34915823	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758146	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961171	0.85[EUR][1000 genomes]
rs6994668	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7010368	0.85[EUR][1000 genomes]
rs7011734	0.85[EUR][1000 genomes]
rs7831184	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9774207	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35044745	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:91073400-91093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91075000-91091000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:91078400-91090200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:91085800-91087400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:91086000-91091400	Weak transcription	Brain Anterior Caudate	brain

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