Variant report

Variant	rs1805871
Chromosome Location	chr8:91070789-91070790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91012551..91014325-chr8:91069932..91072701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10088137	0.95[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs10088826	0.86[CEU][hapmap]
rs10095826	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100369	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs10100993	0.83[EUR][1000 genomes]
rs10109405	0.86[EUR][1000 genomes]
rs10109454	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs10113507	0.86[EUR][1000 genomes]
rs10956427	0.83[EUR][1000 genomes]
rs12171665	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1476590	0.84[CEU][hapmap];0.80[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1554927	0.88[EUR][1000 genomes]
rs16786	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs1805793	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs1805796	0.83[CEU][hapmap]
rs1805801	0.83[CEU][hapmap]
rs1805806	0.80[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805807	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805809	0.84[CEU][hapmap];0.80[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805833	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs1805841	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs1805864	0.84[CEU][hapmap];0.80[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1805868	0.83[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805869	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1805870	0.81[CEU][hapmap]
rs1805874	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805889	0.83[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2063976	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2103432	0.86[EUR][1000 genomes]
rs2107466	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2142093	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs2142094	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs2178830	0.83[EUR][1000 genomes]
rs2189261	0.81[EUR][1000 genomes]
rs2189618	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2205108	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs2293775	0.88[CEU][hapmap];0.96[YRI][hapmap]
rs2840205	0.82[EUR][1000 genomes]
rs3087750	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34915823	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35044745	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758146	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961165	0.84[CEU][hapmap];0.80[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4961168	0.80[CHB][hapmap];0.96[YRI][hapmap]
rs4961169	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4961171	0.82[EUR][1000 genomes]
rs6993054	0.82[CEU][hapmap]
rs6994668	0.88[EUR][1000 genomes]
rs7010210	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs7010368	0.82[EUR][1000 genomes]
rs7011734	0.82[EUR][1000 genomes]
rs709816	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs7459846	0.87[CEU][hapmap]
rs7831184	0.88[EUR][1000 genomes]
rs867185	0.83[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1805871	NBN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91058000-91071400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:91058600-91070800	Weak transcription	HSMMtube	muscle
7	chr8:91058600-91078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:91059000-91071000	Weak transcription	Primary T cells from cord blood	blood
9	chr8:91059000-91074400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:91059000-91084800	Weak transcription	Brain Anterior Caudate	brain
11	chr8:91061400-91071000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:91065600-91070800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:91065800-91072800	Weak transcription	Left Ventricle	heart
14	chr8:91066200-91083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:91066400-91071200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:91068000-91072200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:91068200-91071400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr8:91068400-91070800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:91068400-91070800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:91068400-91072800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:91068600-91071800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr8:91068800-91071200	Weak transcription	Primary B cells from cord blood	blood
24	chr8:91068800-91071800	Weak transcription	Adipose Nuclei	Adipose
25	chr8:91068800-91074400	Weak transcription	HSMM	muscle
26	chr8:91069000-91071800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:91069600-91074400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:91070000-91073800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:91070400-91070800	Weak transcription	Fetal Brain Male	brain

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