Variant report

Variant	rs6988013
Chromosome Location	chr8:91111193-91111194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90996132..90998933-chr8:91109607..91112377,2	K562	blood:
2	chr8:91109881..91112864-chr8:91114233..91115750,2	K562	blood:
3	chr8:91110151..91112011-chr8:91117979..91120218,2	K562	blood:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10088826	0.81[CEU][hapmap]
rs10092098	0.95[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10095826	0.82[CEU][hapmap]
rs10104321	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1011683	0.82[CEU][hapmap];0.81[CHD][hapmap];0.82[MEX][hapmap]
rs10216992	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1061302	0.82[MEX][hapmap]
rs1063045	0.86[MEX][hapmap]
rs10755930	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10956431	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11778638	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11782032	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12171665	0.90[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs12547667	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549107	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12679577	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13265193	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13277204	0.85[EUR][1000 genomes]
rs1800645	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805794	0.82[MEX][hapmap]
rs1805797	0.86[MEX][hapmap]
rs1805799	0.82[MEX][hapmap]
rs1805808	0.82[CEU][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap]
rs1805818	0.86[MEX][hapmap]
rs1805870	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805876	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805877	0.90[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2049815	0.80[EUR][1000 genomes]
rs2049816	0.80[EUR][1000 genomes]
rs2073635	0.86[MEX][hapmap]
rs2074596	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2091887	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2091888	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097825	0.82[CEU][hapmap]
rs2107465	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap]
rs2142093	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2142094	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2234744	0.82[MEX][hapmap]
rs2267543	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs2308962	0.86[MEX][hapmap]
rs2735384	0.81[JPT][hapmap]
rs2735387	0.81[JPT][hapmap]
rs2735388	0.81[JPT][hapmap]
rs28380191	0.84[EUR][1000 genomes]
rs4960982	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961166	0.80[CEU][hapmap];0.82[MEX][hapmap]
rs6470668	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6470671	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6470708	0.85[EUR][1000 genomes]
rs6470709	0.85[EUR][1000 genomes]
rs6470713	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993054	0.86[CEU][hapmap]
rs6994202	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6999227	0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs7012846	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71528739	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs741778	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7459441	0.85[EUR][1000 genomes]
rs7459577	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7459845	0.88[EUR][1000 genomes]
rs7459846	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7460025	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7461859	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7463278	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7463923	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7465539	0.85[EUR][1000 genomes]
rs7815279	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7816839	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7821408	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7822272	0.82[CEU][hapmap]
rs926092	0.82[MEX][hapmap]
rs9297784	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9649958	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs9774207	0.85[EUR][1000 genomes]
rs988934	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6988013	DECR1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91110000-91114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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