Variant report

Variant	rs1477907
Chromosome Location	chr8:89033615-89033616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1477905	0.86[EUR][1000 genomes]
rs1961469	0.95[EUR][1000 genomes]
rs1961470	0.95[EUR][1000 genomes]
rs2616482	0.98[ASN][1000 genomes]
rs2616483	0.98[ASN][1000 genomes]
rs2616502	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2664363	0.89[EUR][1000 genomes]
rs2664368	0.85[JPT][hapmap]
rs278885	0.86[EUR][1000 genomes]
rs278886	0.87[EUR][1000 genomes]
rs278888	0.87[EUR][1000 genomes]
rs278890	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs278891	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs278892	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs278893	0.87[EUR][1000 genomes]
rs278894	0.87[EUR][1000 genomes]
rs278895	0.82[EUR][1000 genomes]
rs55792056	0.95[EUR][1000 genomes]
rs56801608	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv2762758	chr8:89013301-89033922	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89027000-89039400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:89030200-89050000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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