Variant report

Variant	rs2664363
Chromosome Location	chr8:89014455-89014456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088179	0.80[ASN][1000 genomes]
rs1031826	0.99[ASN][1000 genomes]
rs1031827	0.84[JPT][hapmap]
rs1477905	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1477907	0.89[EUR][1000 genomes]
rs16875013	0.83[CHD][hapmap]
rs16875583	0.82[ASN][1000 genomes]
rs1961469	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961470	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1989738	0.81[ASN][1000 genomes]
rs2616502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2616510	0.95[ASN][1000 genomes]
rs2664365	0.97[ASN][1000 genomes]
rs278885	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278886	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs278888	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278890	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs278891	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs278892	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs278893	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs278894	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278895	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs278897	0.86[ASN][1000 genomes]
rs55792056	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56801608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62524653	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv2762758	chr8:89013301-89033922	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89012200-89014800	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:89012800-89014800	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:89013400-89014800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:89013400-89014800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:89013400-89017200	Weak transcription	Aorta	Aorta
6	chr8:89013600-89015000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:89013600-89018800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:89013800-89014600	Enhancers	HUVEC	blood vessel
9	chr8:89013800-89014800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:89013800-89018800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:89014200-89017400	Weak transcription	Primary B cells from cord blood	blood

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