Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10088179	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10091380	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1031826	0.85[ASN][1000 genomes]
rs11784463	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16875013	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs16875583	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1961469	0.85[ASN][1000 genomes]
rs1961470	0.85[ASN][1000 genomes]
rs1989738	0.86[ASN][1000 genomes]
rs2616510	0.84[ASN][1000 genomes]
rs2664363	0.86[ASN][1000 genomes]
rs2664365	0.86[ASN][1000 genomes]
rs278888	0.86[ASN][1000 genomes]
rs278891	0.81[CHD][hapmap]
rs278894	0.86[ASN][1000 genomes]
rs278895	0.85[ASN][1000 genomes]
rs28721409	0.93[AFR][1000 genomes]
rs55792056	0.85[ASN][1000 genomes]
rs56801608	0.85[ASN][1000 genomes]
rs62524653	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs278897	FAM82B	cis	cerebellum	SCAN
rs278897	OSGIN2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88972200-88976800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:88972400-88976600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:88972600-88977000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:88972800-88977600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:88973000-88976000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:88973000-88976600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:88974600-88977600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:88975000-88976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:88975200-88977000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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