Variant report

Variant	rs62524653
Chromosome Location	chr8:88951114-88951115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088179	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091380	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1031826	0.81[ASN][1000 genomes]
rs11784463	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875013	0.88[ASN][1000 genomes]
rs16875583	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1961469	0.82[ASN][1000 genomes]
rs1961470	0.82[ASN][1000 genomes]
rs1989738	0.90[ASN][1000 genomes]
rs2616510	0.82[ASN][1000 genomes]
rs2664363	0.82[ASN][1000 genomes]
rs2664365	0.83[ASN][1000 genomes]
rs278888	0.82[ASN][1000 genomes]
rs278894	0.82[ASN][1000 genomes]
rs278895	0.82[ASN][1000 genomes]
rs278897	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28721409	0.90[AFR][1000 genomes]
rs55792056	0.82[ASN][1000 genomes]
rs56801608	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv6292	chr8:88920735-88965372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88947800-88952000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:88948200-88952000	Enhancers	Osteobl	bone
3	chr8:88949400-88951800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:88949400-88952000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:88949600-88952400	Enhancers	HUVEC	blood vessel
6	chr8:88950000-88951400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:88950000-88951600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:88950000-88952800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:88950200-88951400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:88950200-88951400	Enhancers	NHDF-Ad	bronchial
11	chr8:88950200-88951600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:88950400-88951200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:88950400-88951400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:88950400-88951800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:88950600-88951600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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