Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:88995159..88996901-chr8:88998562..89000818,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1477905	0.91[ASN][1000 genomes]
rs16875013	0.84[CHB][hapmap]
rs16875583	0.81[ASN][1000 genomes]
rs1961469	0.98[ASN][1000 genomes]
rs1961470	0.98[ASN][1000 genomes]
rs1989738	0.81[ASN][1000 genomes]
rs2616502	0.89[ASN][1000 genomes]
rs2616510	0.94[ASN][1000 genomes]
rs2664363	0.99[ASN][1000 genomes]
rs2664365	0.96[ASN][1000 genomes]
rs278885	0.88[ASN][1000 genomes]
rs278886	0.91[ASN][1000 genomes]
rs278888	0.99[ASN][1000 genomes]
rs278890	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs278891	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs278892	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs278893	0.91[ASN][1000 genomes]
rs278894	0.99[ASN][1000 genomes]
rs278895	0.98[ASN][1000 genomes]
rs278897	0.85[ASN][1000 genomes]
rs55792056	0.98[ASN][1000 genomes]
rs56801608	0.98[ASN][1000 genomes]
rs62524653	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88999200-89001000	Enhancers	Brain Germinal Matrix	brain
2	chr8:88999400-89000200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:88999600-89000800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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