Variant report

Variant	rs1480650
Chromosome Location	chr14:56500026-56500027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12432868	0.93[ASN][1000 genomes]
rs1480657	0.80[ASN][1000 genomes]
rs1480658	0.80[ASN][1000 genomes]
rs1480659	0.80[ASN][1000 genomes]
rs1630156	0.92[ASN][1000 genomes]
rs1679800	0.89[ASN][1000 genomes]
rs1679801	0.92[ASN][1000 genomes]
rs1679807	0.92[ASN][1000 genomes]
rs1679809	0.90[ASN][1000 genomes]
rs1679810	0.91[ASN][1000 genomes]
rs1679811	0.91[ASN][1000 genomes]
rs1756622	0.91[ASN][1000 genomes]
rs1756624	0.92[ASN][1000 genomes]
rs1756625	0.92[ASN][1000 genomes]
rs1756628	0.92[ASN][1000 genomes]
rs1756630	0.91[ASN][1000 genomes]
rs1756631	0.91[ASN][1000 genomes]
rs1952892	0.89[ASN][1000 genomes]
rs4144405	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7158108	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56496800-56509400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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