Variant report

Variant	rs1756625
Chromosome Location	chr14:56493445-56493446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56487196..56488964-chr14:56491977..56494936,2	MCF-7	breast:
2	chr14:56492963..56495703-chr14:56498948..56501320,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1188188	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1188194	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1188196	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1188198	0.87[EUR][1000 genomes]
rs1188199	0.87[EUR][1000 genomes]
rs1188200	0.86[EUR][1000 genomes]
rs1201387	0.87[EUR][1000 genomes]
rs1211177	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1211455	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1212200	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1212974	0.87[EUR][1000 genomes]
rs12432868	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1480650	0.92[ASN][1000 genomes]
rs1480657	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480658	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480659	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1623669	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1630156	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679800	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1679801	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679807	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679809	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679810	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1679811	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756622	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756624	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1756628	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1756630	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756631	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952892	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60269373	0.85[EUR][1000 genomes]
rs922655	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1756625	ACTR10	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56491000-56495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:56491600-56495000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:56492000-56494600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:56492400-56497000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:56493000-56494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:56493000-56495400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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