Variant report

Variant	rs1756628
Chromosome Location	chr14:56491941-56491942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1188188	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1188194	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1188196	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1188198	0.89[EUR][1000 genomes]
rs1188199	0.89[EUR][1000 genomes]
rs1188200	0.88[EUR][1000 genomes]
rs1188203	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1188204	0.82[CEU][hapmap]
rs1201387	0.89[EUR][1000 genomes]
rs1211177	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1211455	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1212200	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1212974	0.89[EUR][1000 genomes]
rs12432868	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1480650	0.92[ASN][1000 genomes]
rs1480657	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480658	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480659	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1623669	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1630156	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679800	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1679801	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679807	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679809	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679810	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1679811	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756622	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756624	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1756625	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1756630	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756631	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952892	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60269373	0.87[EUR][1000 genomes]
rs922655	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56491000-56492000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56491000-56492400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:56491000-56495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:56491600-56495000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:56491800-56492400	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links