Variant report

Variant	rs1482085
Chromosome Location	chr4:86630512-86630513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10012090	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs10516755	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs1116117	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11732231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11736641	0.82[CEU][hapmap]
rs13105921	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs13111293	0.89[ASW][hapmap];0.82[CEU][hapmap];0.91[MEX][hapmap]
rs13111662	0.89[ASW][hapmap];0.82[CEU][hapmap];0.91[MEX][hapmap]
rs13113784	0.84[ASN][1000 genomes]
rs13137008	0.82[CEU][hapmap]
rs1482094	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs2062098	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs2101134	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2198328	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs2601855	0.82[CEU][hapmap]
rs28528923	0.84[ASN][1000 genomes]
rs28621471	0.90[ASN][1000 genomes]
rs343849	0.89[ASW][hapmap];0.82[CEU][hapmap];0.91[MEX][hapmap]
rs343854	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs343860	0.82[CEU][hapmap];0.95[MEX][hapmap]
rs6828509	1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs6848047	0.85[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6849659	0.83[MKK][hapmap]
rs7655100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658797	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs7660702	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs7677114	0.82[CEU][hapmap];0.91[MEX][hapmap]
rs7692808	0.82[CEU][hapmap]
rs900203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994285	0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86625400-86638200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86629200-86631400	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:86629200-86633200	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86629400-86635800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:86629800-86635800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:86629800-86636200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:86629800-86636600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:86629800-86638000	Weak transcription	Fetal Lung	lung
9	chr4:86629800-86638000	Weak transcription	HSMMtube	muscle
10	chr4:86630000-86634200	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86630400-86632200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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