Variant report

Variant	rs1483397
Chromosome Location	chr11:83636902-83636903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1483396	0.85[ASN][1000 genomes]
rs1516625	0.85[ASN][1000 genomes]
rs2625519	0.80[CEU][hapmap];0.85[ASN][1000 genomes]
rs2625521	0.87[EUR][1000 genomes]
rs2675717	0.88[CEU][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2852735	0.81[CEU][hapmap]
rs2852736	0.88[CEU][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs790356	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83635400-83638600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83636200-83644200	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83636600-83642600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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