Variant report

Variant	rs2675717
Chromosome Location	chr11:83629911-83629912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10501551	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1483394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1483395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1483397	0.88[CEU][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2222121	1.00[ASN][1000 genomes]
rs2625519	0.85[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs2625521	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2625522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2675718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2852735	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852736	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs708239	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs790357	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs790358	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs790359	1.00[ASN][1000 genomes]
rs790360	1.00[ASN][1000 genomes]
rs790361	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs790362	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs790375	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs809844	1.00[CHB][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2675717	TMEM126B	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83628800-83630200	Enhancers	Brain Angular Gyrus	brain
6	chr11:83629200-83630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:83629200-83630600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:83629400-83630000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:83629400-83630200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:83629600-83630400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:83629600-83630400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:83629800-83634200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain

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