Variant report

Variant	rs790357
Chromosome Location	chr11:83620940-83620941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10501551	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1483394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1483395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2222121	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2625521	0.83[ASN][1000 genomes]
rs2625522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2675717	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2675718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2852735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2852736	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4944454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs708239	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7117453	1.00[YRI][hapmap]
rs790343	1.00[ASW][hapmap];0.94[GIH][hapmap];1.00[YRI][hapmap]
rs790353	0.94[GIH][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs790359	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790360	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790361	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790362	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs790375	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7947150	1.00[YRI][hapmap]
rs809844	1.00[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv527778	chr11:83620787-83620940	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:83618800-83623600	Enhancers	Liver	Liver
6	chr11:83620200-83622400	Enhancers	Fetal Kidney	kidney
7	chr11:83620800-83621000	Enhancers	Brain Cingulate Gyrus	brain

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