Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1483394	0.85[JPT][hapmap]
rs1483395	0.86[JPT][hapmap]
rs1557432	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1973692	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973693	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2625522	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2675717	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2675718	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2852735	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2852736	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4944454	0.82[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6592152	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs708239	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs790343	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs790345	0.92[ASN][1000 genomes]
rs790357	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs790361	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs790362	0.85[CHB][hapmap]
rs790375	0.82[CEU][hapmap]
rs7926735	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs809844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898024	chr11:83576460-83602367	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83585200-83606600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83585200-83606600	Weak transcription	Brain Hippocampus Middle	brain

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