Variant report

Variant	rs790343
Chromosome Location	chr11:83604906-83604907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501551	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1557432	0.93[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973692	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1973693	0.93[AMR][1000 genomes]
rs2675718	1.00[YRI][hapmap]
rs35595946	0.88[ASN][1000 genomes]
rs4944454	0.80[CEU][hapmap]
rs56837259	0.86[ASN][1000 genomes]
rs6592152	0.87[AMR][1000 genomes]
rs708239	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7117453	1.00[YRI][hapmap]
rs790345	0.81[AMR][1000 genomes]
rs790353	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs790357	1.00[ASW][hapmap];0.94[GIH][hapmap];1.00[YRI][hapmap]
rs790361	0.88[MEX][hapmap];1.00[YRI][hapmap]
rs790375	0.80[CEU][hapmap];0.93[GIH][hapmap]
rs7926735	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7947150	1.00[YRI][hapmap]
rs867033	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83585200-83606600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83585200-83606600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83603000-83606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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