Variant report

Variant	rs2625519
Chromosome Location	chr11:83629426-83629427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1483396	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483397	0.80[CEU][hapmap];0.85[ASN][1000 genomes]
rs1516625	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675717	0.85[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs2852736	0.85[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs790356	0.94[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83628800-83630200	Enhancers	Brain Angular Gyrus	brain
6	chr11:83629200-83629800	Enhancers	Stomach Smooth Muscle	stomach
7	chr11:83629200-83630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:83629200-83630600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:83629400-83629800	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:83629400-83629800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83629400-83630000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:83629400-83630200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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