Variant report

Variant	rs1484211
Chromosome Location	chr15:74604603-74604604
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74603809..74604779-chr15:74612712..74613709,3	K562	blood:
2	chr15:74427753..74430311-chr15:74603237..74605329,2	K562	blood:
3	chr15:74428468..74430311-chr15:74603033..74605329,2	K562	blood:
4	chr15:74590504..74592017-chr15:74603747..74605953,2	K562	blood:
5	chr15:74604086..74605037-chr15:74614467..74615451,3	K562	blood:
6	chr15:74603776..74604768-chr15:74612699..74613491,6	MCF-7	breast:
7	chr15:74603389..74605701-chr15:74607624..74611476,3	K562	blood:
8	chr15:74604204..74604761-chr15:74614716..74615372,2	MCF-7	breast:
9	chr15:74594780..74601167-chr15:74601665..74605713,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140481	Chromatin interaction
ENSG00000261384	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs240047	1.00[EUR][1000 genomes]
rs2629734	1.00[EUR][1000 genomes]
rs28416908	1.00[EUR][1000 genomes]
rs2930293	1.00[EUR][1000 genomes]
rs2930309	1.00[EUR][1000 genomes]
rs351163	1.00[EUR][1000 genomes]
rs351165	1.00[EUR][1000 genomes]
rs351167	1.00[EUR][1000 genomes]
rs351169	1.00[EUR][1000 genomes]
rs351183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs381832	1.00[EUR][1000 genomes]
rs440793	1.00[EUR][1000 genomes]
rs7171215	1.00[EUR][1000 genomes]
rs936728	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74596600-74606600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:74596600-74609800	Weak transcription	A549	lung
4	chr15:74601200-74607800	Weak transcription	Fetal Lung	lung
5	chr15:74603000-74604800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:74603000-74610800	Enhancers	Fetal Brain Male	brain
7	chr15:74603200-74605200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74603200-74605600	Enhancers	Brain Germinal Matrix	brain
9	chr15:74603400-74605600	Enhancers	Fetal Brain Female	brain
10	chr15:74603600-74606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:74603800-74605200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:74603800-74605800	Enhancers	Fetal Muscle Leg	muscle
13	chr15:74604000-74604800	Flanking Active TSS	K562	blood
14	chr15:74604000-74605000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:74604200-74604800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:74604200-74605000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74604200-74605400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:74604200-74605400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:74604200-74607400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr15:74604200-74613400	Enhancers	Placenta	Placenta
21	chr15:74604400-74604800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74604400-74604800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr15:74604400-74604800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr15:74604400-74605000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:74604400-74605600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:74604400-74605600	Enhancers	Fetal Intestine Small	intestine
27	chr15:74604400-74607000	Weak transcription	NH-A	brain
28	chr15:74604400-74607200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:74604400-74613200	Enhancers	Fetal Thymus	thymus
30	chr15:74604600-74604800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr15:74604600-74604800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:74604600-74604800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:74604600-74604800	Enhancers	Thymus	Thymus
34	chr15:74604600-74605000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr15:74604600-74606200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:74604600-74607000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:74604600-74607200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:74604600-74607200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:74604600-74607200	Weak transcription	HSMM	muscle
40	chr15:74604600-74608400	Weak transcription	Hela-S3	cervix

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