Variant report

Variant	rs351183
Chromosome Location	chr15:74598815-74598816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74419514..74421455-chr15:74598626..74600426,2	MCF-7	breast:
2	chr15:74419808..74420446-chr15:74598539..74599345,2	MCF-7	breast:
3	chr15:74412284..74415144-chr15:74598064..74600098,2	MCF-7	breast:
4	chr15:74594700..74596625-chr15:74596694..74599231,2	K562	blood:

Variant related genes	Relation type
ENSG00000167178	Chromatin interaction
ENSG00000248540	Chromatin interaction
ENSG00000261384	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1484211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs240047	1.00[EUR][1000 genomes]
rs2629734	1.00[EUR][1000 genomes]
rs28416908	1.00[EUR][1000 genomes]
rs2930293	1.00[EUR][1000 genomes]
rs2930309	1.00[EUR][1000 genomes]
rs351163	1.00[EUR][1000 genomes]
rs351165	1.00[EUR][1000 genomes]
rs351167	1.00[EUR][1000 genomes]
rs351169	1.00[EUR][1000 genomes]
rs351185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs381832	1.00[EUR][1000 genomes]
rs440793	1.00[EUR][1000 genomes]
rs7171215	1.00[EUR][1000 genomes]
rs936728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74593800-74601000	Enhancers	Fetal Brain Female	brain
3	chr15:74593800-74601800	Enhancers	Fetal Brain Male	brain
4	chr15:74594000-74602000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr15:74596600-74600400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74596600-74606600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:74596600-74609800	Weak transcription	A549	lung
8	chr15:74597200-74599000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:74597800-74599800	Weak transcription	Brain Germinal Matrix	brain
10	chr15:74597800-74600800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:74598200-74601400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:74598200-74602000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:74598400-74599000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
14	chr15:74598400-74599400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr15:74598400-74601400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr15:74598400-74601800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:74598600-74599200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:74598600-74601200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:74598600-74601800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:74598800-74600000	Enhancers	HMEC	breast
21	chr15:74598800-74600600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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