Variant report

Variant	rs2930293
Chromosome Location	chr15:74601982-74601983
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1484211	1.00[EUR][1000 genomes]
rs240047	1.00[EUR][1000 genomes]
rs2629734	1.00[EUR][1000 genomes]
rs28416908	1.00[EUR][1000 genomes]
rs2930309	1.00[EUR][1000 genomes]
rs351163	1.00[EUR][1000 genomes]
rs351165	1.00[EUR][1000 genomes]
rs351167	1.00[EUR][1000 genomes]
rs351169	1.00[EUR][1000 genomes]
rs351183	1.00[EUR][1000 genomes]
rs351185	1.00[EUR][1000 genomes]
rs381832	1.00[EUR][1000 genomes]
rs440793	1.00[EUR][1000 genomes]
rs7171215	1.00[EUR][1000 genomes]
rs936728	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74594000-74602000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:74596600-74606600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74596600-74609800	Weak transcription	A549	lung
5	chr15:74598200-74602000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74600800-74603200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74601200-74602000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:74601200-74607800	Weak transcription	Fetal Lung	lung
9	chr15:74601400-74603800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:74601600-74602000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:74601600-74602000	Enhancers	Fetal Brain Female	brain
12	chr15:74601600-74602200	Enhancers	Brain Germinal Matrix	brain
13	chr15:74601600-74604000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:74601800-74603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:74601800-74603000	Weak transcription	Fetal Brain Male	brain
16	chr15:74601800-74603200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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