Variant report

Variant	rs1487889
Chromosome Location	chr11:106680531-106680532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10789547	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890600	0.85[EUR][1000 genomes]
rs10890604	0.92[ASN][1000 genomes]
rs10890612	0.85[EUR][1000 genomes]
rs10890614	0.82[EUR][1000 genomes]
rs10890617	0.85[EUR][1000 genomes]
rs11211932	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211949	0.83[EUR][1000 genomes]
rs12285359	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12800415	0.83[EUR][1000 genomes]
rs1487892	0.91[ASN][1000 genomes]
rs1565160	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2200652	0.90[EUR][1000 genomes]
rs4754169	0.97[ASN][1000 genomes]
rs7107834	0.84[EUR][1000 genomes]
rs7926569	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs923327	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9651675	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106679200-106692200	Weak transcription	Ovary	ovary
2	chr11:106680200-106680800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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