Variant report

Variant	rs1487892
Chromosome Location	chr11:106692416-106692417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10160762	0.90[EUR][1000 genomes]
rs10789547	0.92[ASN][1000 genomes]
rs10890604	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890611	0.85[EUR][1000 genomes]
rs11211932	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12274602	0.85[EUR][1000 genomes]
rs12285359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487889	0.91[ASN][1000 genomes]
rs1487891	0.89[EUR][1000 genomes]
rs1565160	0.84[AFR][1000 genomes]
rs4754169	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924555	0.84[EUR][1000 genomes]
rs7926569	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7937534	0.84[EUR][1000 genomes]
rs923327	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9651675	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106689600-106699800	Weak transcription	Fetal Heart	heart
2	chr11:106691200-106692800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:106691200-106693600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:106691200-106693600	Enhancers	Fetal Lung	lung
5	chr11:106691400-106692800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:106691400-106694600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:106691800-106692600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:106691800-106693400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:106692000-106692600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:106692000-106693000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:106692200-106692600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:106692400-106692800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links