Variant report

Variant	rs1487891
Chromosome Location	chr11:106692228-106692229
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10160762	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890600	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10890604	0.89[EUR][1000 genomes]
rs1120250	0.95[ASN][1000 genomes]
rs11211936	0.93[ASN][1000 genomes]
rs12285359	0.89[EUR][1000 genomes]
rs12800415	0.94[ASN][1000 genomes]
rs1487892	0.89[EUR][1000 genomes]
rs2200652	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2200656	0.95[ASN][1000 genomes]
rs4754169	0.88[EUR][1000 genomes]
rs7107834	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7924555	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7937534	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942606	0.98[ASN][1000 genomes]
rs9651675	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106689600-106699800	Weak transcription	Fetal Heart	heart
2	chr11:106691200-106692800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:106691200-106693600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:106691200-106693600	Enhancers	Fetal Lung	lung
5	chr11:106691400-106692800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:106691400-106694600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:106691800-106692600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:106691800-106693400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:106692000-106692400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:106692000-106692400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:106692000-106692600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:106692000-106693000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:106692200-106692400	Enhancers	Ovary	ovary
14	chr11:106692200-106692600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links