Variant report

Variant	rs7937534
Chromosome Location	chr11:106701934-106701935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10160762	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890600	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10890604	0.84[EUR][1000 genomes]
rs1120250	0.96[ASN][1000 genomes]
rs11211936	0.93[ASN][1000 genomes]
rs12285359	0.84[EUR][1000 genomes]
rs12800415	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1487891	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1487892	0.84[EUR][1000 genomes]
rs2200652	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2200656	0.94[ASN][1000 genomes]
rs4754169	0.83[EUR][1000 genomes]
rs7107834	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7924555	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942606	0.99[ASN][1000 genomes]
rs9651675	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7937534	CASP4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106700400-106705200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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