Variant report

Variant	rs2200656
Chromosome Location	chr11:106713125-106713126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10160762	0.96[ASN][1000 genomes]
rs10890600	0.95[ASN][1000 genomes]
rs1120250	0.94[ASN][1000 genomes]
rs11211936	0.92[ASN][1000 genomes]
rs12800415	0.91[ASN][1000 genomes]
rs1487891	0.95[ASN][1000 genomes]
rs2200652	0.95[ASN][1000 genomes]
rs7107834	0.95[ASN][1000 genomes]
rs7924555	0.95[ASN][1000 genomes]
rs7937534	0.94[ASN][1000 genomes]
rs7942606	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2200656	SLN	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106712600-106713600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr11:106712800-106713400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:106712800-106713400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr11:106712800-106713600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links