Variant report

Variant	rs2200652
Chromosome Location	chr11:106696576-106696577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10160762	0.98[ASN][1000 genomes]
rs10789547	0.86[EUR][1000 genomes]
rs10890600	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120250	0.97[ASN][1000 genomes]
rs11211936	0.95[ASN][1000 genomes]
rs12800415	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1487889	0.90[EUR][1000 genomes]
rs1487891	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2200656	0.95[ASN][1000 genomes]
rs7107834	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924555	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7926569	0.86[EUR][1000 genomes]
rs7937534	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7942606	0.97[ASN][1000 genomes]
rs923327	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv972067	chr11:106694843-106698001	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106689600-106699800	Weak transcription	Fetal Heart	heart
2	chr11:106694600-106699200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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