Variant report

Variant	rs1488262
Chromosome Location	chr3:112223440-112223441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10934177	1.00[ASN][1000 genomes]
rs1385527	1.00[ASN][1000 genomes]
rs1386896	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1388442	1.00[ASN][1000 genomes]
rs1472106	1.00[ASN][1000 genomes]
rs1472107	1.00[ASN][1000 genomes]
rs1488260	1.00[ASN][1000 genomes]
rs1488263	1.00[AMR][1000 genomes]
rs1491629	1.00[ASN][1000 genomes]
rs1532198	1.00[ASN][1000 genomes]
rs1552707	1.00[ASN][1000 genomes]
rs1814053	1.00[ASN][1000 genomes]
rs1817694	1.00[ASN][1000 genomes]
rs1844864	1.00[ASN][1000 genomes]
rs1877362	1.00[ASN][1000 genomes]
rs1877364	1.00[ASN][1000 genomes]
rs1906519	1.00[ASN][1000 genomes]
rs2029317	1.00[ASN][1000 genomes]
rs2399431	1.00[ASN][1000 genomes]
rs2464612	1.00[ASN][1000 genomes]
rs2633570	1.00[AMR][1000 genomes]
rs2638025	1.00[ASN][1000 genomes]
rs2638030	1.00[ASN][1000 genomes]
rs2638033	1.00[ASN][1000 genomes]
rs2638034	1.00[ASN][1000 genomes]
rs2638036	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2638041	1.00[ASN][1000 genomes]
rs2638043	1.00[ASN][1000 genomes]
rs2638044	1.00[ASN][1000 genomes]
rs2668216	1.00[ASN][1000 genomes]
rs2668218	1.00[AMR][1000 genomes]
rs2705506	0.86[ASN][1000 genomes]
rs2705510	1.00[ASN][1000 genomes]
rs2705514	1.00[ASN][1000 genomes]
rs2705520	1.00[ASN][1000 genomes]
rs2705524	1.00[ASN][1000 genomes]
rs2705540	1.00[AMR][1000 genomes]
rs2705551	1.00[ASN][1000 genomes]
rs2705554	1.00[ASN][1000 genomes]
rs2705563	1.00[ASN][1000 genomes]
rs2931761	1.00[AMR][1000 genomes]
rs2933139	1.00[ASN][1000 genomes]
rs2933140	1.00[ASN][1000 genomes]
rs2969894	1.00[ASN][1000 genomes]
rs3109033	0.86[ASN][1000 genomes]
rs62264580	0.83[ASN][1000 genomes]
rs6793232	1.00[ASN][1000 genomes]
rs7618978	1.00[ASN][1000 genomes]
rs901829	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs971832	1.00[ASN][1000 genomes]
rs986883	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1005323	chr3:112171990-112274613	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112214600-112228600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:112218800-112241600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:112219000-112225000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:112219800-112227200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:112220800-112225000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:112221200-112227000	Weak transcription	Primary T cells from cord blood	blood
7	chr3:112222400-112223600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:112222800-112223600	Flanking Active TSS	GM12878-XiMat	blood
9	chr3:112223000-112223600	Active TSS	Gastric	stomach
10	chr3:112223200-112226200	Enhancers	Primary B cells from cord blood	blood
11	chr3:112223200-112228400	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:112223400-112225200	Weak transcription	Fetal Thymus	thymus

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