Variant report

Variant	rs62264580
Chromosome Location	chr3:112334641-112334642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112333133..112335338-chr3:112353119..112355694,2	MCF-7	breast:
2	chr3:112278908..112280422-chr3:112332975..112334877,2	MCF-7	breast:
3	chr3:112334145..112336575-chr3:112358541..112360757,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10934177	0.83[ASN][1000 genomes]
rs1385527	0.83[ASN][1000 genomes]
rs1386896	0.83[ASN][1000 genomes]
rs1388442	0.83[ASN][1000 genomes]
rs1472106	0.83[ASN][1000 genomes]
rs1472107	0.83[ASN][1000 genomes]
rs1488260	0.83[ASN][1000 genomes]
rs1488262	0.83[ASN][1000 genomes]
rs1491629	0.83[ASN][1000 genomes]
rs1532198	0.83[ASN][1000 genomes]
rs1552707	0.83[ASN][1000 genomes]
rs1814053	0.83[ASN][1000 genomes]
rs1817694	0.83[ASN][1000 genomes]
rs1844864	0.83[ASN][1000 genomes]
rs1877362	0.83[ASN][1000 genomes]
rs1877364	0.83[ASN][1000 genomes]
rs1906519	0.83[ASN][1000 genomes]
rs2029317	0.83[ASN][1000 genomes]
rs2399431	0.83[ASN][1000 genomes]
rs2464612	0.83[ASN][1000 genomes]
rs2638025	0.83[ASN][1000 genomes]
rs2638030	0.83[ASN][1000 genomes]
rs2638033	0.83[ASN][1000 genomes]
rs2638034	0.83[ASN][1000 genomes]
rs2638036	0.83[ASN][1000 genomes]
rs2638041	0.83[ASN][1000 genomes]
rs2638043	0.83[ASN][1000 genomes]
rs2638044	0.83[ASN][1000 genomes]
rs2668216	0.83[ASN][1000 genomes]
rs2705510	0.83[ASN][1000 genomes]
rs2705514	0.83[ASN][1000 genomes]
rs2705520	0.83[ASN][1000 genomes]
rs2705524	0.83[ASN][1000 genomes]
rs2705551	0.83[ASN][1000 genomes]
rs2705554	0.83[ASN][1000 genomes]
rs2705563	0.83[ASN][1000 genomes]
rs2933139	0.83[ASN][1000 genomes]
rs2933140	0.83[ASN][1000 genomes]
rs2969894	0.83[ASN][1000 genomes]
rs62262457	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62262458	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6793232	0.83[ASN][1000 genomes]
rs7618978	0.83[ASN][1000 genomes]
rs901829	0.83[ASN][1000 genomes]
rs971832	0.83[ASN][1000 genomes]
rs986883	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112298800-112335200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:112305800-112334800	Weak transcription	Aorta	Aorta
4	chr3:112312600-112346200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
6	chr3:112316200-112342800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:112316600-112337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:112318000-112341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:112322200-112337200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:112327800-112340600	Weak transcription	Fetal Kidney	kidney
11	chr3:112329600-112341800	Strong transcription	HSMM	muscle
12	chr3:112330000-112335000	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr3:112330000-112336600	Strong transcription	NHDF-Ad	bronchial
14	chr3:112330200-112338400	Strong transcription	HSMMtube	muscle
15	chr3:112330400-112335000	Strong transcription	NH-A	brain
16	chr3:112330400-112346800	Strong transcription	NHLF	lung
17	chr3:112331200-112334800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:112331200-112335400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:112331200-112351600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:112331400-112354800	Weak transcription	Psoas Muscle	Psoas
21	chr3:112331600-112335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:112331600-112337400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:112331600-112337800	Weak transcription	HUVEC	blood vessel
24	chr3:112331600-112338200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:112331600-112338400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:112331800-112334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:112331800-112336200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:112332200-112335000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:112332200-112337800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:112332400-112335200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:112332600-112335000	Strong transcription	Osteobl	bone
32	chr3:112332600-112337600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:112332800-112337800	Strong transcription	Adipose Nuclei	Adipose
34	chr3:112332800-112339000	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr3:112333000-112336600	Strong transcription	Fetal Lung	lung
36	chr3:112333400-112334800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:112333400-112336200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr3:112333400-112336400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
39	chr3:112333400-112337000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:112333400-112337600	Strong transcription	Ovary	ovary
41	chr3:112333400-112338000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:112333400-112338000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr3:112333600-112337800	Strong transcription	Colon Smooth Muscle	Colon
44	chr3:112333800-112336800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:112334000-112335200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr3:112334000-112336400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:112334000-112336400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr3:112334000-112336400	Strong transcription	Fetal Stomach	stomach
49	chr3:112334000-112338400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:112334200-112334800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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