Variant report

Variant	rs1491160
Chromosome Location	chr3:56559580-56559581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11923431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491161	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17216650	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17216657	0.91[CHB][hapmap]
rs17216747	0.91[CHB][hapmap]
rs17288852	0.90[CHB][hapmap]
rs1907458	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6798667	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9832626	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56556600-56560800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56556800-56560800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:56559400-56559600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:56559400-56560000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:56559400-56561200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:56559400-56561400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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