Variant report
| Variant | rs1491693 |
|---|---|
| Chromosome Location | chr3:70146454-70146455 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MITF-6 | chr3:70145635-70147139 | ucscGeneNc_uc003dog_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs13318952 | 1.00[AMR][1000 genomes] |
| rs1491692 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36118030 | 1.00[AMR][1000 genomes] |
| rs55780003 | 1.00[EUR][1000 genomes] |
| rs60754263 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6549273 | 1.00[AMR][1000 genomes] |
| rs6773284 | 1.00[AMR][1000 genomes] |
| rs6781876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6781981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73836100 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73838053 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73838061 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73838064 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7641392 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs966926 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9815363 | 1.00[AMR][1000 genomes] |
| rs9821387 | 1.00[AMR][1000 genomes] |
| rs9836245 | 1.00[AMR][1000 genomes] |
| rs9841257 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533396 | chr3:69964029-70538306 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:70146400-70146600 | Enhancers | GM12878-XiMat | blood |
